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Commit 438cec95 authored by Azza Ahmed's avatar Azza Ahmed
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link fixes

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check-links: check-links:
npx linkinator https://doc.daic.tudelft.nl/ --include '(!?^https://doc.daic.tudleft.nl).*' -r --skip '(.*_print|change-me|login.daic|servicedesk.*)' npx --yes linkinator https://daic.tudelft.nl/ -r \
--skip '(.*_print|change-me|login.daic|servicedesk.*|topdesk\.net|wiki\.tudelft\.nl)'\
--markdown \
--verbosity error
...@@ -122,7 +122,7 @@ In addition to funding from contributing departments, DAIC has received support ...@@ -122,7 +122,7 @@ In addition to funding from contributing departments, DAIC has received support
{{< card header="MMLL" >}} {{< card header="MMLL" >}}
<a href="https://www.st.ewi.tudelft.nl/~mtjspaan/mmll/index_en.html"> <a href="https://www.st.ewi.tudelft.nl/~mtjspaan/mmll/index_en.html">
<img src="/docs/introduction/images/funders_MMLLlogo.png" height=150 width=350 /> <img src="/docs/about/images/funders_MMLLlogo.png" height=150 width=350 />
</a> </a>
{{< /card >}} {{< /card >}}
...@@ -163,7 +163,7 @@ In addition to funding from contributing departments, DAIC has received support ...@@ -163,7 +163,7 @@ In addition to funding from contributing departments, DAIC has received support
{{< cardpane >}} {{< cardpane >}}
{{< card header="Others" title="" subtitle="" >}} {{< card header="Others" title="" subtitle="" >}}
<a href="https://daic.tudelft.nl/docs/introduction/#contributing-departments"> <a href="https://daic.tudelft.nl/docs/about/contributors-funders/#contributing-departments">
Contributing departments' funding Contributing departments' funding
</a> </a>
{{< /card >}} {{< /card >}}
... ...
......
--- ---
title: "Available software" title: "Available software"
linkTitle: "Available software" linkTitle: "Available software"
weight: 1 weight: 2
description: > description: >
How to find and work with pre-installed software? How to find and work with pre-installed software?
--- ---
... ...
......
...@@ -30,7 +30,7 @@ This user agreement is intended to establish the expectations between all users ...@@ -30,7 +30,7 @@ This user agreement is intended to establish the expectations between all users
* Any (perceived) imbalance in the use of resources by a certain QoS or user should not be hold against a user or the scheduler, but should be discussed in the user board. * Any (perceived) imbalance in the use of resources by a certain QoS or user should not be hold against a user or the scheduler, but should be discussed in the user board.
### Access and accounts ### Access and accounts
- DAIC is a cluster dedicated for TU Delft _researchers_ (eg, PhD students, postdocs, .. etc) _from participating groups_ (see [Contributing departments](/docs/introduction/contributors-funders)). - DAIC is a cluster dedicated for TU Delft _researchers_ (eg, PhD students, postdocs, .. etc) _from participating groups_ (see [Contributing departments](/docs/about/contributors-funders)).
{{% alert title="Needing access to DAIC?" color="primary" %}} {{% alert title="Needing access to DAIC?" color="primary" %}}
To access DAIC resources, eligible candidates from these groups can request an account via the [DAIC request Access form](https://tudelft.topdesk.net/tas/public/ssp/content/detail/service?unid=c6d0e44564b946eaa049898ffd4e6938&from=d75e860b-7825-4711-8225-8754895b3507). To access DAIC resources, eligible candidates from these groups can request an account via the [DAIC request Access form](https://tudelft.topdesk.net/tas/public/ssp/content/detail/service?unid=c6d0e44564b946eaa049898ffd4e6938&from=d75e860b-7825-4711-8225-8754895b3507).
...@@ -55,7 +55,7 @@ To access DAIC resources, eligible candidates from these groups can request an a ...@@ -55,7 +55,7 @@ To access DAIC resources, eligible candidates from these groups can request an a
2. You are not allowed to use the cluster for reasons unrelated to your studies and research. 2. You are not allowed to use the cluster for reasons unrelated to your studies and research.
3. If your jobs are destructive to other users' jobs or are threatening cluster integrity, your jobs might be canceled. You have the responsibility at all times to avoid behavior which interferes negatively with other users' cluster usage. See [Consequences of irresponsible usage](#consequences-of-irresponsible-usage). 3. If your jobs are destructive to other users' jobs or are threatening cluster integrity, your jobs might be canceled. You have the responsibility at all times to avoid behavior which interferes negatively with other users' cluster usage. See [Consequences of irresponsible usage](#consequences-of-irresponsible-usage).
4. If the destructive behavior of your jobs does not change over time or you are unresponsive to e-mails from system admins requesting information or requiring immediate action regarding your cluster use, you might receive a ban from the cluster. See [Consequences of irresponsible usage](#consequences-of-irresponsible-usage). 4. If the destructive behavior of your jobs does not change over time or you are unresponsive to e-mails from system admins requesting information or requiring immediate action regarding your cluster use, you might receive a ban from the cluster. See [Consequences of irresponsible usage](#consequences-of-irresponsible-usage).
5. You are expected to **cite and acknowledge DAIC** in your scientific publications using the format specified in the [Citation and Acknowledgement](/docs/introduction/advisors-impact#citation-and-acknowledgement) section. Additionally, please remember to post any scientific output based-off work performed on DAIC to the [ScientificOutput MatterMost channel](https://mattermost.tudelft.nl/daic/channels/scientificoutput). 5. You are expected to **cite and acknowledge DAIC** in your scientific publications using the format specified in the [Citation and Acknowledgement](/docs/about/advisors-impact#citation-and-acknowledgement) section. Additionally, please remember to post any scientific output based-off work performed on DAIC to the [ScientificOutput MatterMost channel](https://mattermost.tudelft.nl/daic/channels/scientificoutput).
### Responsible cluster usage ### Responsible cluster usage
You are responsible that your jobs run efficiently: You are responsible that your jobs run efficiently:
...@@ -86,7 +86,7 @@ When you encounter problems, please follow the subsequent steps, in the indicate ...@@ -86,7 +86,7 @@ When you encounter problems, please follow the subsequent steps, in the indicate
2. You can also ask questions to fellow users on the [MatterMost channel](https://mattermost.tudelft.nl/signup_user_complete/?id=cb1k3t6ytpfjbf7r397395axyc&md=link&sbr=su). 2. You can also ask questions to fellow users on the [MatterMost channel](https://mattermost.tudelft.nl/signup_user_complete/?id=cb1k3t6ytpfjbf7r397395axyc&md=link&sbr=su).
3. For prolonged problems, your initial contact point is your supervisor/PI. 3. For prolonged problems, your initial contact point is your supervisor/PI.
4. As a final step, you can contact the cluster administrators for technical sysadmin problems or persistent efficiency problems, or for more information if you are not sure why you are banned from the cluster. You can do this by reporting your question, through the {{< external-link "https://tudelft.topdesk.net/tas/public/ssp/" "Self Service Portal" >}}, to the Service Desk. In your question, refer to the ‘DAIC cluster’. 4. As a final step, you can contact the cluster administrators for technical sysadmin problems or persistent efficiency problems, or for more information if you are not sure why you are banned from the cluster. You can do this by reporting your question, through the {{< external-link "https://tudelft.topdesk.net/tas/public/ssp/" "Self Service Portal" >}}, to the Service Desk. In your question, refer to the ‘DAIC cluster’.
5. For severe recurring problems, complaints and suggestions for policy changes, or issues affecting multiple users, you can contact the [DAIC advisory board](/docs/introduction/advisors-impact/) to bring it up as an agenda point in the next user board meeting. 5. For severe recurring problems, complaints and suggestions for policy changes, or issues affecting multiple users, you can contact the [DAIC advisory board](/docs/about/advisors-impact/) to bring it up as an agenda point in the next user board meeting.
...@@ -119,7 +119,7 @@ This means that you will sometimes have to wait for other jobs to finish and at ...@@ -119,7 +119,7 @@ This means that you will sometimes have to wait for other jobs to finish and at
* Do interactive code development, debugging and testing in your local machine, as much as possible. In the cluster, try to organize your code as scripts, instead of working interactively in the command line. * Do interactive code development, debugging and testing in your local machine, as much as possible. In the cluster, try to organize your code as scripts, instead of working interactively in the command line.
* If you need to test and debug in the cluster, for example, in a GPU node, request an interactive session and do not work in the login node itself (See [Interactive jobs on compute nodes](/docs/manual/job-submission/job-interactive)). * If you need to test and debug in the cluster, for example, in a GPU node, request an interactive session and do not work in the login node itself (See [Interactive jobs on compute nodes](/docs/manual/job-submission/slurm-basics/#interactive-jobs-on-compute-nodes)).
* Save results frequently: your job can crash, the server can become overloaded, or the network shares can become unavailable. * Save results frequently: your job can crash, the server can become overloaded, or the network shares can become unavailable.
... ...
......
---
title: "Operating system"
weight: 1
description: >
Overview of the DAIC operating system and its implications for available software.
---
{{% pageinfo %}}
At present, DAIC and [DelftBlue](https://doc.dhpc.tudelft.nl/delftblue) use different software stacks. This includes differences in the operating system (CentOS 7 for DAIC _vs._ Red Hat Enterprise Linux 8 for DelftBlue) and, consequently, the available modules.
Be mindful that code or environments developed on one system may not run identically on the other. Check the [DelftBlue modules](https://doc.dhpc.tudelft.nl/delftblue/DHPC-modules/) and [DAIC software](/docs/manual/software) pages to avoid portability issues.
{{% /pageinfo %}}
## Operating system
DAIC runs the {{< external-link "https://en.wikipedia.org/wiki/Red_Hat_Enterprise_Linux" "Red Hat Enterprise Linux 7" >}} distribution. Most common software—such as programming languages, libraries, and development tools—is installed on the nodes (see [Available software](/docs/manual/software/available-software)).
However, niche or recently released packages may be missing. If your work depends on a state-of-the-art program not yet available for Red Hat 7, you’ll need to install it manually. See [Installing software](/docs/manual/software/installing-software/) for instructions.
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