Feature - Submission time tracking with bonus refactoring

Description

Adds submission time tracking to the core and refactors many things wrong with the pipeline.

Additions

• Submission time tracking for submissions, dispatches to workers, analysis results, and finished reports.

Changes

• Things be final
• Changed dependency field orders
• Removed template support
• isHadException had isException
• Updated tests

Test and Review

Resolves #104 (closed)

To be filled in by the reviewers

• All of the methods are commented to expectation

• The methods are tested to satisfaction

• There are no unnecessary files present in the MR

• The continuous integration has no problems with the MR

• The MR is filled in as requested (including labels, milestones, and reviewers)

• The documentation is up-to-date

• All nullable parameters are marked as such